Input Genomic Region-Level Summary Data

Completed on: Sun Apr 09 21:21:30 2023 (Asia/Shanghai), with the runtime of (22 seconds).

An interactive table for user-input genomic regions (n=676, being processed). This table has four columns: with 1st column Input GR for input genomic regions in the format of chr:start-end (genome build hg19), 2nd column Chromosome for the chromosome, 3rd column Length for the region length (bp), 4nd column Pvalue for use-input significance information.

Output: Linked Genes

Linked Gene table contains information on genes (n=701, linked from the input genomic regions), including the column GScores (ranged from 1 to 10) that quantifies the degree to which genes are likely modulated by input genomic regions. Linked genes are sorted by their linked gene scores and are hyperlinked to GeneCards for further information. Please refer to Evidence table for details on the linking evidence.

Evidence table displays information about the genomic regions (listed under the column GR) that overlap the input genomic regions (listed under the column Input GR). The overlapped regions are used to define linked genes (listed under the column Linked genes) based on the evidence provided (see the column Evidence). The column Evidence indicates the datasets used, such as Proximity for genomic regions in proximity, the prefix PCHiC_ for promoter capture Hi-C datasets, and the prefix ABC_ for enhancer-gene map (ABC) datasets.

Output: Gene Subnetwork

A network visualisation of the subnetwork, with 33 genes/nodes color-coded by linked gene scores (ranged from 1 to 10). An editable pdf file is also available for download.

DOWNLOAD .pdf

Figure 1: Visualisation of the subnetwork, with genes/nodes color-coded by linked gene scores (ranged from 1 to 10).

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An interactive table for the subnetwork genes (n=33), with the column GScores for linked gene scores (ranged from 1 to 10). Linked genes are hyperlinked to GeneCards.