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  SUBNETWORK ANALYSER (REGIONS) - SAR : Identifying a gene subnetwork based on genes linked from input genomic region-level summary data

Error Messages: your input at Steps 1 and 2
  • Please check your input genomic region-level summary data with two columns (chr:start-end and p-values between 0 and 1); otherwise, they will be disregarded.
  • Before clicking the SUBMIT button, please paste your own data at Step 2 EVERY TIME. Note that the text box at Step 2 is pre-filled with the provided example when the interface page is first-visited or refreshed.
  • If the above issues are resolved, and you still receive the error messages, it simply means that no subnetwork has been returned.

  Please stand by, while SAR is analysing your input genomic region-level summary data ...
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Step 1: Choose genome build (all genome coordinates converted to hg19).

Step 2: Paste your genomic regions (1st column for regions formatted as chr:start-end, 2nd for the significance info; see Example Input). 

Step 3: Identify linked genes based on genomic proximity, enhancer-gene maps, or promoter capture Hi-C.

Step 4: Choose which gene network to use.

Step 5: Identify the subnetwork with the desired number of genes.


Genomic region significance.
Significance of the subnetwork.

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