Section 8 ENRICHMENT ANALYSER (REGIONS) - EAR
8.1 Input Interface
Input
Step 1
andStep 2
: Enter a list of genomic regions. Please ensure that input genomic coordinates (Step 2
) are consistent with the genome build (Step 1
).Step 3
: Use genomic proximity, quantitative trait locus mapping, or promoter capture Hi-C to identify linked genes.Step 4
: Select from a list of supported ontologies.More Controls
: Use additional parameters to fine-tune the steps described above.SUBMIT
: click the SUBMIT button to execute the analysis.
Output
- Example Output includes interactive tables and high-quality figures for enrichment results. A summary of input data and the runtime (computed on the server side) is also provided for reference.

FIGURE 8.1: The interface of ENRICHMENT ANALYSER (REGIONS) - EAR
. The Show/Hide Info
toggle button contains the instructions on how to use it, including inputs, outputs, and other relevant information.
8.2 Enrichment Results
- Under the
Input Genomic Region Information
tab,An interactive table
lists user-input genomic regions.

FIGURE 8.2: The user-input data displayed under the Input Genomic Region Information
tab for exploration.
- Under the
Output: Linked Genes
tab,An interactive table
lists genes linked from the input genomic regions.

FIGURE 8.3: An interactive table listing genes linked from the input genomic regions under the Output: Linked Genes
tab.
- Under the
Output: Enriched Terms
tab,An interactive table
lists enriched ontology terms.

FIGURE 8.4: An interactive table listing enriched ontology terms displayed under the Output: Enriched Terms
tab.
- Under the
Output: Dotplot
tab,A dotplot
illustrates enriched ontology terms. A downloadable pdf file is also provided.

FIGURE 8.5: A dotplot illustrating enriched ontology terms displayed under the Output: Dotplot
tab.
- Under the
Output: Forest Plot
tab,A forest plot
illustrates enriched ontology terms. A downloadable pdf file is also provided.

FIGURE 8.6: A forest plot illustrating enriched ontology terms displayed under the Output: Forest Plot
tab.